大豆PHD家族蛋白的全基因组鉴定及表达特征分析

PHD（Plant Homeodomain Finger）基因家族编码一类锌指转录因子,广泛参与植物的生长发育和逆境应答过程。通过全基因组鉴定获得了95个大豆PHD家族蛋白。通过共线性分析、进化树构建、基因结构和功能结构域鉴定、GO注释分析、不同组织间和非生物胁迫下表达分析等,获得了大豆PHD家族基因复制、家族进化、保守结构域及基因表达等信息。结果表明,大豆PHD基因在家族进化、基因结构和保守结构域上存在较大变异,可能参与Zn ²⁺结合、DNA结合及表观遗传调控等分子过程,参与调控植物生长发育和逆境应答。这些结果为进一步研究大豆PHD家族在生长发育和逆境应答中的生物学功能提供重要线索。     

Strangulation of the duodenum just oral to its caudal flexura caused by a volvulus

An 8-year-old Haflinger mare with a 10-day-old foal at foot was referred with mild abdominal pain. On the basis of clinical examination, blood and peritoneal fluid analysis, the cause of pain was suspected septic peritonitis. The horse was initially managed medically, with the horse placed in box confinement under close monitoring. No permission was given for an exploratory laparotomy, and it was decided to perform a diagnostic laparoscopy in the standing horse. The laparoscopy revealed a 360-degree anticlockwise partial duodenal volvulus of the caudal descending duodenum, which was manually reduced (hand-assisted laparoscopy). After the release, the mesentery of the duodenum showed an ischaemic band (yellowish white and dark red with a hyperaemic side) and the duodenum had a distinct ischaemic ring (orally and aborally) distinguishing the incarcerated part from the normal duodenum. Ten minutes after the release, the colour remained the same. In conjunction with the owner, it was decided to euthanise the pony. Pathology confirmed the presence of a strangulation ring and the ischaemic condition of the involved duodenum.     

Comparative performance of the highly invasive Mimosa invisa and its less invasive subspecies under different nutrient and light conditions

Invasive plants may be more plastic than non‐invasive plants and maintain high fitness under various environmental conditions. Previous studies mainly focused on the comparisons between invasive and native plants, and comparisons between highly invasive and less invasive exotic species are still relatively rare, especially for comparisons at the subspecies level. This study examined the effects of nutrient addition and shading on the performance of the highly invasive Mimosa invisa and its less invasive subspecies M. invisa var. inermis under either isolated or competitive conditions. Nutrient addition increased biomass and plant height and decreased root‐to‐shoot ratio (R/S). Shading decreased biomass and R/S and increased plant height. Under isolated conditions, the two invaders did not differ in R/S, plant height and plasticity of these traits in response to nutrient addition or shading, and the two invaders also did not differ in biomass production under each of the nutrient and light treatments. When the two invaders competed with each other, M. invisa outcompeted M. invisa var. inermis under high soil nutrient conditions, and the two invaders did not differ in performance under other growth conditions. Thus, only considering competition may we find out the difference between highly invasive species and their closely related, less invasive subspecies. Management of M. invisa should focus on habitats with high soil nutrient availability, in which M. invisa is more likely to dominate.     

金寨毛竹纤维形态及化学成分

通过离析法制取毛竹纤维,观察并记录纤维长度和宽度,计算纤维长宽比,按照国家标准分别测定化学成分质量分数,以此对3~5年生金寨毛竹不同竹干高度、径向的纤维形态和化学成分进行研究。结果表明:3~5年生金寨毛竹平均纤维长度均大于1500μm,且随着竹龄的增加而增加,而在高度上变异规律不明显;平均纤维长宽比均大于100,在竹干高度为5.5 m处达到最大值;灰分质量分数随竹龄的增加而减小,随竹干高度的增加而增加;综纤维素质量分数随竹龄的增加而增加,随竹干高度的增加趋于稳定;苯醇抽提物和纤维素质量分数随竹龄增加先减小再增加。综上可知,金寨毛竹是优良的造纸原料。     

Occurrence of prophage and historical perspectives associated with the dissemination of huanglongbing in mainland China

Huanglongbing (HLB), associated with a non-culturable bacterium ‘Candidatus Liberibacter asiaticus’ (CLas), is a highly destructive citrus disease with a long but poorly documented history in China. No effective treatment for HLB is available. The identification of new prophages in abundant CLas genomic sequence data provides new insights into both the diversity of CLas strains and HLB management. In this study, CLas populations from nine provinces were surveyed for the presence of prophage. Two major prophage typing groups (PTGs) were discovered to be associated with two different altitude regions: strains of CLas in PTG1 from high altitude regions (HAR) mainly contained prophage Type 1 only or Types 1 and 3, whereas strains of CLas in PTG2 from low altitude regions (LAR) mainly contained prophage Type 2. The discovery of these CLas population patterns provides evidence for independent origins of HLB in HAR and LAR. Guangdong province is the generally recognized domestic region of origin for HLB and is primarily responsible for the dissemination of HLB in LAR through transport of seedlings. Both Yunnan and Sichuan provinces are the probable regions of origin for HLB in HAR. PTG2 was further divided into two subgroups: PTG2-1, found in Guangdong, Fujian and Guangxi and PTG2-2, found in Jiangxi, Zhejiang and Hunan. These regions and prophage types are correlated with early and late introductions of HLB in LAR. These molecular analyses were supported by studying the history of the dissemination of HLB in historical documents.     

Prioritising sites for pollinators in a fragmented coastal nectar habitat network in Western Europe

Landscape Ecology - Habitat loss and fragmentation contribute significantly to pollinator decline and biodiversity loss globally. Conserving high quality habitats whilst restoring and connecting...     

Crude garlic extract significantly inhibits replication of grapevine viruses

Efforts to control viral diseases of grapevine include the production of certified material and development of virus-resistant transgenic grapevines. However, effective antiviral agents, once the viruses have infected the plants, are still lacking. This study shows that a crude garlic extract has significant antiviral activity against grapevine viruses. Replication of grapevine leafroll-associated virus 2 (GLRaV-2) was obviously inhibited in grapevine cv. Cabernet Sauvignon calli treated with diluted (1:100) garlic extract. The relative RNA levels of GLRaV-2 and grapevine fleck virus (GFkV) in cv. Summer Black grapevine in in vitro-grown plantlets 10 days after treatment with diluted (1:100) garlic extract were about 22% and 20%, respectively, of that in controls. The viral RNA accumulation of GLRaV-2, GFkV, grapevine virus A (GVA), grapevine fanleaf virus (GFLV) and grapevine rupestris stem pitting-associated virus (GRSPaV) in field-grown grapevine cv. Centennial Seedless plants sprayed with diluted (1:100) garlic extract were about 31–40%, 26–38%, 18–31%, 17–42% and 15–18%, respectively, of that in controls. Moreover, the garlic extract treatment led to a significant decrease in viral RNA accumulation of GLRaV-3, GLRaV-2, GVA, GFkV, GFLV, GRSPaV and grapevine Pinot Gris virus in pot-grown grapevine cv. Shine Muscat plants, and viral disease symptoms in these plants were obviously attenuated. In addition, this extract significantly induced expression of pathogenesis-related protein genes and stimulated activity of antioxidant enzymes in grapevines. Taken together, these results indicate that the crude garlic extract acts as a significant inhibitor against a broad range of grapevine viruses.     

Correction to: Individual based modelling of fish migration in a 2-D river system: model description and case study

Landscape Ecology - In the original publication of the article, the third author name has been misspelt. The correct name is given in this Correction. The original version of this article was revised.     

大白菜TPS基因家族鉴定及其在高温胁迫下的表达分析

为明确大白菜TPS(BrTPS)家族成员信息及对高温胁迫信号的响应,本研究利用生物信息学方法,在大白菜基因组数据库中鉴定了BrTPS基因家族成员,并对其理化性质、进化特征、蛋白结构及在高温胁迫下的表达模式进行分析。结果表明,大白菜全基因组含有15个TPS基因家族成员,分布于8条染色体上。除BrTPS14和BrTPS15外,其余成员各含有1个TPS和1个TPP结构域,并且所含motif的排列顺序也完全一致。理化性质分析发现,15个成员的氨基酸长度介于129~1459 aa之间,分子量大小在14.73~165.83 kD之间,大部分BrTPS蛋白为酸性蛋白和亲水蛋白,以无规则卷曲作为二级结构主要构成元件。进化分析表明,大白菜TPS基因家族成员可分为2类,其中ClassⅠ包含5个成员,ClassⅡ包含10个成员。本研究对高温胁迫前后不同组织和持续高温胁迫下叶片中的表达分析,发现大部分的BrTPS基因可对高温胁迫产生响应,但在表达规律上存在差异。这些研究结果为后续研究大白菜TPS基因提供一定参考。     

AMF促进植物吸收矿质元素的生理机制及对土壤硫素的影响

由于人口不断增长,人们要快速得到高产高质粮食的要求迫切,大量使用化肥,导致了有害物质残留,土壤或水污染,土壤板结或某些营养元素相对匮乏等一系列环境问题。丛枝菌根(Arbuscular mycorrhiza, AM)是土壤内常见的共生结构,由AM真菌(AMF)与土壤根系形成。已有研究表明其可通过分泌代谢物,增大根系与土壤接触面积,调节某些土壤元素存在形式等多种途径,影响植物对土壤元素的吸收转运。硫是维持植物生长发育的必需元素之一,可由于植物对S的需要并不如N,P,K大量,现代农业在对土壤进行施肥过程中往往将其忽略,因此土壤缺S正逐渐成为中国农业发展的限制因素。为了解决以上问题,本文将主要对AMF影响植物吸收土壤元素的途径及生理机制进行总结分析。并根据其作用方式特点进一步分析AM共生对植物吸收转运硫素的影响,指出AMF作为生物化肥的可行性,以期为解决现代化肥的替代问题以及土壤缺硫问题提供新的思路。